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Data last updated September 30, 2026
Metadata last updated October 5, 2026
Created September 30, 2026
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Description A dataset from the National Public Health Laboratory, a database of tracing studies on the results of tests and sequencing carried out by SARS-CoV-2. The dataset consists of three tables: 1. SARS-CoV-2 PCR and antigen tests have been performed in humans; 2. Sars-cov-2 report on the results of the Nextclade sequencing; 3. Sars-cov-2 report on the results of the Pangolin sequencing. Data provider means the National Public Health Care Laboratory. Data shall be collected from 1 November 2022.
Documentation
Endpoint description
Endpoint URL
Keywords
    Landing page
    License Creative Commons Attribution 4.0 International
    Publisher
    Serves dataset
    Theme
    Title Sars-cov-2 virus sequencing data (pangolin_ataskaita)
    First field DSR000001
    Access URL
    1. https://api.dataportal.gov.lt/namespaces/195551983/tables/pangolin_ataskaita/query
    Availability
    Byte size 1763200
    Checksum
    Compression format
    Download URL
    1. https://api.dataportal.gov.lt/namespaces/195551983/tables/pangolin_ataskaita/query
    Has policy
    Language
    • English
    • Lithuanian
    Linked schemas
    Media type json
    Modification date September 1, 2026
    Packaging format
    Release date September 22, 2025
    Rights
    Spatial resolution
    Status Completed
    Temporal resolution
    Table schema {"schema_type":"csvw","x-schemaVersion":"1.1","x-columnsCount":15,"tableSchema":{"columns":[{"name":"meg_id","titles":{"lt":"Mėginio identifikacinis numeris","en":"Sample identification number"},"datatype":"string","x-order":1,"x-filterType":"TEXT"},{"name":"linija","titles":{"lt":"Pango priskirta COVID viruso linija","en":"COVID virus lineage assigned by Pango"},"datatype":"string","x-order":2,"x-filterType":"CATEGORY","x-enum":[{"tag":"A"},{"tag":"BF.40"},{"tag":"BF.7"},{"tag":"BF.7.19"},{"tag":"BF.7.22"},{"tag":"BN.1"},{"tag":"BN.1.2.1"},{"tag":"BN.1.2.8"},{"tag":"BN.1.3"},{"tag":"BN.1.3.1"},{"tag":"BN.1.3.5"},{"tag":"BN.3.1"},{"tag":"BQ.1"},{"tag":"BQ.1.1"},{"tag":"BQ.1.1.22"},{"tag":"BQ.1.1.29"},{"tag":"BQ.1.1.44"},{"tag":"BQ.1.1.45"},{"tag":"BQ.1.1.68"},{"tag":"BQ.1.2"},{"tag":"BQ.1.25"},{"tag":"BQ.1.3.1"},{"tag":"BQ.1.3.2"},{"tag":"BQ.1.5"},{"tag":"BQ.1.8"},{"tag":"CH.1.1"},{"tag":"CH.1.1.1"},{"tag":"CH.1.1.15"},{"tag":"CH.1.1.16"},{"tag":"CJ.1.3"},{"tag":"CL.1"},{"tag":"DV.1.1"},{"tag":"DV.6"},{"tag":"DV.6.1"},{"tag":"EF.1.2"},{"tag":"EG.1.6"},{"tag":"EG.10.1.1"},{"tag":"EG.5.1.13"},{"tag":"EG.5.1.18"},{"tag":"EG.5.2"},{"tag":"FL.13"},{"tag":"FL.24.1"},{"tag":"FL.27"},{"tag":"FL.29"},{"tag":"FL.33"},{"tag":"FL.38"},{"tag":"FL.4.5"},{"tag":"FW.1"},{"tag":"FY.6"},{"tag":"GF.1"},{"tag":"GP.2"},{"tag":"HH.2"},{"tag":"JN.1"},{"tag":"JN.1.22"},{"tag":"JN.1.4"},{"tag":"JN.1.4.5"},{"tag":"JN.1.43"},{"tag":"JN.1.44"},{"tag":"JN.1.52"},{"tag":"JN.1.6"},{"tag":"JN.1.60"},{"tag":"JN.1.8.3"},{"tag":"JN.2.5"},{"tag":"LV.1"},{"tag":"Unassigned"},{"tag":"XBB.1"},{"tag":"XBB.1.14"},{"tag":"XBB.1.14.1"},{"tag":"XBB.1.16.28"},{"tag":"XBB.1.16.31"},{"tag":"XBB.1.44.1"},{"tag":"XBB.1.5"},{"tag":"XBB.1.5.18"},{"tag":"XBB.1.5.33"},{"tag":"XBB.1.5.46"},{"tag":"XBB.1.5.48"},{"tag":"XBB.1.5.62"},{"tag":"XBB.1.5.63"},{"tag":"XBB.1.5.99"},{"tag":"XBB.2.10"},{"tag":"XBB.2.3"},{"tag":"XBF"},{"tag":"XDH"}]},{"name":"scorpio_konst_gr","titles":{"lt":"SCORPIO konsteliacijos grupė SCORPIO programinės įrangos priskirta mutacijų konsteliacijos grupė","en":"SCORPIO constellation group Mutation constellation group assigned by the SCORPIO software"},"datatype":"string","x-order":3,"x-filterType":"CATEGORY","x-enum":[{"tag":"Omicron (BA.2-like)"},{"tag":"Omicron (BA.4-like)"},{"tag":"Omicron (BA.5-like)"},{"tag":"Omicron (Unassigned)"},{"tag":"Omicron (XBB-like)"},{"tag":"Omicron (XBB.1-like)"},{"tag":"Omicron (XBB.1.16-like)"},{"tag":"Omicron (XBB.1.5-like)"},{"tag":"Probable Omicron (Unassigned)"}]},{"name":"pango_kolizija","titles":{"lt":"Pango kolizija Nurodoma kiek kitų linijų gali būti priskirta pagal pangoLEARN modelį. Jei vertė 0, tuomet jokios kitos linijos neatitinka dabartinės sekos, jei didesnis nei 0, tuomet nurodoma kiek linijų atitinka nusekvenuotą seką.","en":"Pango collision Indicates how many other lineages can be assigned according to the pangoLEARN model. If the value is 0, then no other lineages match the current sequence; if greater than 0, then it indicates how many lineages match the sequenced sequence."},"datatype":"double","x-order":4,"x-filterType":"RANGE","x-range":{"min":0.0,"max":0.0}},{"name":"scorpio_patik_balas","titles":{"lt":"SCORPIO patikimumo balas Patikimumo balas (angl. support score), kuris nurodo proporciją alternatyvių alelių genų sekoje","en":"SCORPIO support score Support score, which indicates the proportion of alternative alleles in the gene sequence"},"datatype":"double","x-order":5,"x-filterType":"RANGE","x-range":{"min":0.44,"max":1.0}},{"name":"scorpio_kolizijos_ivert","titles":{"lt":"SCORPIO kolizijos įvertis Kolizijos įvertis (angl. confict score) yra proporcija apibrėžtų variantų, kurie turi referencinius alelius sekoje. Dviprasmiškos/kitos ne referencinės/alternatyvios bazės kiekvieno varianto pozicijoje prisideda prie šio įverčio denominatoriaus.","en":"SCORPIO conflict score The conflict score is the proportion of defined variants that have reference alleles in the sequence. Ambiguous/other non-reference/alternative bases at each variant position contribute to the denominator of this score."},"datatype":"double","x-order":6,"x-filterType":"RANGE","x-range":{"min":0.0,"max":0.22}},{"name":"scorpio_pastabos","titles":{"lt":"SCORPIO pastabos SCORPIO programinės įrangos pastabų stulpelis","en":"SCORPIO notes Notes column of the SCORPIO software"},"datatype":"string","x-order":7,"x-filterType":"TEXT"},{"name":"scorpio_versija","titles":{"lt":"SCORPIO versija","en":"SCORPIO version"},"datatype":"string","x-order":8,"x-filterType":"CATEGORY","x-enum":[{"tag":"0.3.19"}]},{"name":"pangolin_modelio_versija","titles":{"lt":"Pangolin modelio versija Pangolin versijos ir modeliai, kurie naudojami sekų klasifikavimui","en":"Pangolin model version Pangolin versions and models used for sequence classification"},"datatype":"string","x-order":9,"x-filterType":"CATEGORY","x-enum":[{"tag":"PANGO-v1.34"},{"tag":"PUSHER-v1.34"}]},{"name":"pangolin_duomenu_versija","titles":{"lt":"Pangolin duomenų versija","en":"Pangolin data version"},"datatype":"string","x-order":10,"x-filterType":"CATEGORY","x-enum":[{"tag":"4.3.1"}]},{"name":"konsteliacijos_versija","titles":{"lt":"Mutacijų konsteliacijos versija","en":"Mutation constellation version"},"datatype":"string","x-order":11,"x-filterType":"CATEGORY","x-enum":[{"tag":"v0.1.12"}]},{"name":"ar_linija_priskira","titles":{"lt":"Ar linija priskirta Nurodoma ar atitinkama seka turi oficialiai priskirtą liniją","en":"Is the line assigned? It is indicated whether the corresponding sequence has an officially assigned line"},"datatype":"boolean","x-order":12},{"name":"kokybe","titles":{"lt":"Statusas, nurodantis, ar sekos kokybė yra tinkama","en":"Status indicating whether the quality of the sequence is adequate"},"datatype":"string","x-order":13,"x-filterType":"CATEGORY","x-enum":[{"tag":"fail"},{"tag":"pass"}]},{"name":"kokybes_pastabos","titles":{"lt":"Kokybės kontrolės pastabos","en":"Quality control notes"},"datatype":"string","x-order":14,"x-filterType":"CATEGORY","x-enum":[{"tag":"Ambiguous_content:0.02"},{"tag":"Ambiguous_content:0.03"},{"tag":"Ambiguous_content:0.04"},{"tag":"Ambiguous_content:0.05"},{"tag":"Ambiguous_content:0.06"},{"tag":"Ambiguous_content:0.07"},{"tag":"Ambiguous_content:0.08"},{"tag":"Ambiguous_content:0.09"},{"tag":"Ambiguous_content:0.1"},{"tag":"Ambiguous_content:0.11"},{"tag":"Ambiguous_content:0.12"},{"tag":"Ambiguous_content:0.13"},{"tag":"Ambiguous_content:0.14"},{"tag":"Ambiguous_content:0.15"},{"tag":"Ambiguous_content:0.16"},{"tag":"Ambiguous_content:0.17"},{"tag":"Ambiguous_content:0.18"},{"tag":"Ambiguous_content:0.19"},{"tag":"Ambiguous_content:0.2"},{"tag":"Ambiguous_content:0.21"},{"tag":"Ambiguous_content:0.22"},{"tag":"Ambiguous_content:0.23"},{"tag":"Ambiguous_content:0.24"},{"tag":"Ambiguous_content:0.26"},{"tag":"Ambiguous_content:0.27"},{"tag":"Ambiguous_content:0.29"},{"tag":"Ambiguous_content:0.3"},{"tag":"Ambiguous_content:0.31"},{"tag":"Ambiguous_content:0.32"},{"tag":"Ambiguous_content:0.35"},{"tag":"Ambiguous_content:0.36"},{"tag":"Ambiguous_content:0.38"},{"tag":"Ambiguous_content:0.39"},{"tag":"Ambiguous_content:0.41"},{"tag":"Ambiguous_content:0.45"},{"tag":"Ambiguous_content:0.48"},{"tag":"Ambiguous_content:0.5"},{"tag":"Ambiguous_content:0.52"},{"tag":"Ambiguous_content:0.71"},{"tag":"Ambiguous_content:0.72"},{"tag":"failed to map"}]},{"name":"bendros_pastabos","titles":{"lt":"Bendros pastabos Pastabų laukas, kuris aprašo problemas susijusias su sprendimų schemomis (angl. decision tree). Jei sekoskaitos kokybės kontrolė netinkama, šiame stulpelyje nurodoma priežastis. Jei seka atitinka VNP slenkstį, kad Scorpio nustatytų mutacijų konsteliaciją, čia bus nurodomas konkretus VNP, alternatyvių ir dviprasmiškų alelių skaičius.","en":"General notes Notes field that describes problems related to decision trees. If sequencing quality control is inadequate, the reason is indicated in this column. If the sequence meets the SNP threshold for Scorpio to identify a mutation constellation, the specific SNP and the number of alternative and ambiguous alleles will be indicated here."},"datatype":"string","x-order":15,"x-filterType":"CATEGORY","x-enum":[{"tag":"Assigned from designation hash."},{"tag":"Usher placements: A(1/1); scorpio found insufficient support to assign a specific lineage"},{"tag":"Usher placements: A(1/1); scorpio lineage BA.2 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage BA.4 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage BA.5 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB.1 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB.1.16 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB.1.5 conflicts with inference lineage A"}]}]}}
    Identifier odr000894
    Other identifier
    1. pangolin_ataskaita
    distribution type Web service/API
    Access url['https://api.dataportal.gov.lt/namespaces/195551983/tables/pangolin_ataskaita/query']
    Access service['DSR000001']
    Byte size1,763,200
    Description translated{'lt': 'Duomenų rinkinys iš Nacionalinės visuomenės sveikatos laboratorijos, sekoskaitos tyrimų duomenų bazės apie SARS-CoV-2 atliktus testų ir sekoskaitos rezultatus. Duomenų rinkinį sudaro trys lentelės: 1. Žmonėms atlikti SARS-CoV-2 PGR ir antigeno testai; 2. SARS-CoV-2 sekoskaitos Nextclade rezultatų ataskaita; 3. SARS-CoV-2 sekoskaitos Pangolin rezultatų ataskaita. Duomenų teikėjas – Nacionalinė visuomenės sveikatos priežiūros laboratorija. Duomenys kaupiami nuo 2022 m. lapkričio 1 d.', 'en': 'A dataset from the National Public Health Laboratory, a database of tracing studies on the results of tests and sequencing carried out by SARS-CoV-2. The dataset consists of three tables: 1. SARS-CoV-2 PCR and antigen tests have been performed in humans; 2. Sars-cov-2 report on the results of the Nextclade sequencing; 3. Sars-cov-2 report on the results of the Pangolin sequencing. Data provider means the National Public Health Care Laboratory. Data shall be collected from 1 November 2022.'}
    Distribution statuscompleted
    Distribution typeweb_service
    Download url['https://api.dataportal.gov.lt/namespaces/195551983/tables/pangolin_ataskaita/query']
    Has viewsFalse
    Idodr000894
    Identifierodr000894
    Language['eng', 'lit']
    Licencecc_by_4_0
    Media typejson
    Modification date2026-09-02T00:00:00+02:00
    Other identifier['pangolin_ataskaita']
    Package idod000894
    Position0
    Release date2025-09-23T00:00:00+02:00
    Resource typedistribution
    Stateactive
    Table schema{"schema_type":"csvw","x-schemaVersion":"1.1","x-columnsCount":15,"tableSchema":{"columns":[{"name":"meg_id","titles":{"lt":"Mėginio identifikacinis numeris","en":"Sample identification number"},"datatype":"string","x-order":1,"x-filterType":"TEXT"},{"name":"linija","titles":{"lt":"Pango priskirta COVID viruso linija","en":"COVID virus lineage assigned by Pango"},"datatype":"string","x-order":2,"x-filterType":"CATEGORY","x-enum":[{"tag":"A"},{"tag":"BF.40"},{"tag":"BF.7"},{"tag":"BF.7.19"},{"tag":"BF.7.22"},{"tag":"BN.1"},{"tag":"BN.1.2.1"},{"tag":"BN.1.2.8"},{"tag":"BN.1.3"},{"tag":"BN.1.3.1"},{"tag":"BN.1.3.5"},{"tag":"BN.3.1"},{"tag":"BQ.1"},{"tag":"BQ.1.1"},{"tag":"BQ.1.1.22"},{"tag":"BQ.1.1.29"},{"tag":"BQ.1.1.44"},{"tag":"BQ.1.1.45"},{"tag":"BQ.1.1.68"},{"tag":"BQ.1.2"},{"tag":"BQ.1.25"},{"tag":"BQ.1.3.1"},{"tag":"BQ.1.3.2"},{"tag":"BQ.1.5"},{"tag":"BQ.1.8"},{"tag":"CH.1.1"},{"tag":"CH.1.1.1"},{"tag":"CH.1.1.15"},{"tag":"CH.1.1.16"},{"tag":"CJ.1.3"},{"tag":"CL.1"},{"tag":"DV.1.1"},{"tag":"DV.6"},{"tag":"DV.6.1"},{"tag":"EF.1.2"},{"tag":"EG.1.6"},{"tag":"EG.10.1.1"},{"tag":"EG.5.1.13"},{"tag":"EG.5.1.18"},{"tag":"EG.5.2"},{"tag":"FL.13"},{"tag":"FL.24.1"},{"tag":"FL.27"},{"tag":"FL.29"},{"tag":"FL.33"},{"tag":"FL.38"},{"tag":"FL.4.5"},{"tag":"FW.1"},{"tag":"FY.6"},{"tag":"GF.1"},{"tag":"GP.2"},{"tag":"HH.2"},{"tag":"JN.1"},{"tag":"JN.1.22"},{"tag":"JN.1.4"},{"tag":"JN.1.4.5"},{"tag":"JN.1.43"},{"tag":"JN.1.44"},{"tag":"JN.1.52"},{"tag":"JN.1.6"},{"tag":"JN.1.60"},{"tag":"JN.1.8.3"},{"tag":"JN.2.5"},{"tag":"LV.1"},{"tag":"Unassigned"},{"tag":"XBB.1"},{"tag":"XBB.1.14"},{"tag":"XBB.1.14.1"},{"tag":"XBB.1.16.28"},{"tag":"XBB.1.16.31"},{"tag":"XBB.1.44.1"},{"tag":"XBB.1.5"},{"tag":"XBB.1.5.18"},{"tag":"XBB.1.5.33"},{"tag":"XBB.1.5.46"},{"tag":"XBB.1.5.48"},{"tag":"XBB.1.5.62"},{"tag":"XBB.1.5.63"},{"tag":"XBB.1.5.99"},{"tag":"XBB.2.10"},{"tag":"XBB.2.3"},{"tag":"XBF"},{"tag":"XDH"}]},{"name":"scorpio_konst_gr","titles":{"lt":"SCORPIO konsteliacijos grupė SCORPIO programinės įrangos priskirta mutacijų konsteliacijos grupė","en":"SCORPIO constellation group Mutation constellation group assigned by the SCORPIO software"},"datatype":"string","x-order":3,"x-filterType":"CATEGORY","x-enum":[{"tag":"Omicron (BA.2-like)"},{"tag":"Omicron (BA.4-like)"},{"tag":"Omicron (BA.5-like)"},{"tag":"Omicron (Unassigned)"},{"tag":"Omicron (XBB-like)"},{"tag":"Omicron (XBB.1-like)"},{"tag":"Omicron (XBB.1.16-like)"},{"tag":"Omicron (XBB.1.5-like)"},{"tag":"Probable Omicron (Unassigned)"}]},{"name":"pango_kolizija","titles":{"lt":"Pango kolizija Nurodoma kiek kitų linijų gali būti priskirta pagal pangoLEARN modelį. Jei vertė 0, tuomet jokios kitos linijos neatitinka dabartinės sekos, jei didesnis nei 0, tuomet nurodoma kiek linijų atitinka nusekvenuotą seką.","en":"Pango collision Indicates how many other lineages can be assigned according to the pangoLEARN model. If the value is 0, then no other lineages match the current sequence; if greater than 0, then it indicates how many lineages match the sequenced sequence."},"datatype":"double","x-order":4,"x-filterType":"RANGE","x-range":{"min":0.0,"max":0.0}},{"name":"scorpio_patik_balas","titles":{"lt":"SCORPIO patikimumo balas Patikimumo balas (angl. support score), kuris nurodo proporciją alternatyvių alelių genų sekoje","en":"SCORPIO support score Support score, which indicates the proportion of alternative alleles in the gene sequence"},"datatype":"double","x-order":5,"x-filterType":"RANGE","x-range":{"min":0.44,"max":1.0}},{"name":"scorpio_kolizijos_ivert","titles":{"lt":"SCORPIO kolizijos įvertis Kolizijos įvertis (angl. confict score) yra proporcija apibrėžtų variantų, kurie turi referencinius alelius sekoje. Dviprasmiškos/kitos ne referencinės/alternatyvios bazės kiekvieno varianto pozicijoje prisideda prie šio įverčio denominatoriaus.","en":"SCORPIO conflict score The conflict score is the proportion of defined variants that have reference alleles in the sequence. Ambiguous/other non-reference/alternative bases at each variant position contribute to the denominator of this score."},"datatype":"double","x-order":6,"x-filterType":"RANGE","x-range":{"min":0.0,"max":0.22}},{"name":"scorpio_pastabos","titles":{"lt":"SCORPIO pastabos SCORPIO programinės įrangos pastabų stulpelis","en":"SCORPIO notes Notes column of the SCORPIO software"},"datatype":"string","x-order":7,"x-filterType":"TEXT"},{"name":"scorpio_versija","titles":{"lt":"SCORPIO versija","en":"SCORPIO version"},"datatype":"string","x-order":8,"x-filterType":"CATEGORY","x-enum":[{"tag":"0.3.19"}]},{"name":"pangolin_modelio_versija","titles":{"lt":"Pangolin modelio versija Pangolin versijos ir modeliai, kurie naudojami sekų klasifikavimui","en":"Pangolin model version Pangolin versions and models used for sequence classification"},"datatype":"string","x-order":9,"x-filterType":"CATEGORY","x-enum":[{"tag":"PANGO-v1.34"},{"tag":"PUSHER-v1.34"}]},{"name":"pangolin_duomenu_versija","titles":{"lt":"Pangolin duomenų versija","en":"Pangolin data version"},"datatype":"string","x-order":10,"x-filterType":"CATEGORY","x-enum":[{"tag":"4.3.1"}]},{"name":"konsteliacijos_versija","titles":{"lt":"Mutacijų konsteliacijos versija","en":"Mutation constellation version"},"datatype":"string","x-order":11,"x-filterType":"CATEGORY","x-enum":[{"tag":"v0.1.12"}]},{"name":"ar_linija_priskira","titles":{"lt":"Ar linija priskirta Nurodoma ar atitinkama seka turi oficialiai priskirtą liniją","en":"Is the line assigned? It is indicated whether the corresponding sequence has an officially assigned line"},"datatype":"boolean","x-order":12},{"name":"kokybe","titles":{"lt":"Statusas, nurodantis, ar sekos kokybė yra tinkama","en":"Status indicating whether the quality of the sequence is adequate"},"datatype":"string","x-order":13,"x-filterType":"CATEGORY","x-enum":[{"tag":"fail"},{"tag":"pass"}]},{"name":"kokybes_pastabos","titles":{"lt":"Kokybės kontrolės pastabos","en":"Quality control notes"},"datatype":"string","x-order":14,"x-filterType":"CATEGORY","x-enum":[{"tag":"Ambiguous_content:0.02"},{"tag":"Ambiguous_content:0.03"},{"tag":"Ambiguous_content:0.04"},{"tag":"Ambiguous_content:0.05"},{"tag":"Ambiguous_content:0.06"},{"tag":"Ambiguous_content:0.07"},{"tag":"Ambiguous_content:0.08"},{"tag":"Ambiguous_content:0.09"},{"tag":"Ambiguous_content:0.1"},{"tag":"Ambiguous_content:0.11"},{"tag":"Ambiguous_content:0.12"},{"tag":"Ambiguous_content:0.13"},{"tag":"Ambiguous_content:0.14"},{"tag":"Ambiguous_content:0.15"},{"tag":"Ambiguous_content:0.16"},{"tag":"Ambiguous_content:0.17"},{"tag":"Ambiguous_content:0.18"},{"tag":"Ambiguous_content:0.19"},{"tag":"Ambiguous_content:0.2"},{"tag":"Ambiguous_content:0.21"},{"tag":"Ambiguous_content:0.22"},{"tag":"Ambiguous_content:0.23"},{"tag":"Ambiguous_content:0.24"},{"tag":"Ambiguous_content:0.26"},{"tag":"Ambiguous_content:0.27"},{"tag":"Ambiguous_content:0.29"},{"tag":"Ambiguous_content:0.3"},{"tag":"Ambiguous_content:0.31"},{"tag":"Ambiguous_content:0.32"},{"tag":"Ambiguous_content:0.35"},{"tag":"Ambiguous_content:0.36"},{"tag":"Ambiguous_content:0.38"},{"tag":"Ambiguous_content:0.39"},{"tag":"Ambiguous_content:0.41"},{"tag":"Ambiguous_content:0.45"},{"tag":"Ambiguous_content:0.48"},{"tag":"Ambiguous_content:0.5"},{"tag":"Ambiguous_content:0.52"},{"tag":"Ambiguous_content:0.71"},{"tag":"Ambiguous_content:0.72"},{"tag":"failed to map"}]},{"name":"bendros_pastabos","titles":{"lt":"Bendros pastabos Pastabų laukas, kuris aprašo problemas susijusias su sprendimų schemomis (angl. decision tree). Jei sekoskaitos kokybės kontrolė netinkama, šiame stulpelyje nurodoma priežastis. Jei seka atitinka VNP slenkstį, kad Scorpio nustatytų mutacijų konsteliaciją, čia bus nurodomas konkretus VNP, alternatyvių ir dviprasmiškų alelių skaičius.","en":"General notes Notes field that describes problems related to decision trees. If sequencing quality control is inadequate, the reason is indicated in this column. If the sequence meets the SNP threshold for Scorpio to identify a mutation constellation, the specific SNP and the number of alternative and ambiguous alleles will be indicated here."},"datatype":"string","x-order":15,"x-filterType":"CATEGORY","x-enum":[{"tag":"Assigned from designation hash."},{"tag":"Usher placements: A(1/1); scorpio found insufficient support to assign a specific lineage"},{"tag":"Usher placements: A(1/1); scorpio lineage BA.2 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage BA.4 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage BA.5 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB.1 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB.1.16 conflicts with inference lineage A"},{"tag":"Usher placements: A(1/1); scorpio lineage XBB.1.5 conflicts with inference lineage A"}]}]}}
    Title translated{'lt': 'SARS-CoV-2 viruso sekoskaitos duomenys (pangolin_ataskaita)', 'en': 'Sars-cov-2 virus sequencing data (pangolin_ataskaita)'}